U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SEU SEUSS transcriptional co-regulator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840981, updated on 18-Sep-2024

    Summary

    Official Symbol
    SEU
    Official Full Name
    SEUSS transcriptional co-regulator
    Primary source
    TAIR:AT1G43850
    Locus tag
    AT1G43850
    See related
    Araport:AT1G43850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28H19.10; F28H19_10; seuss
    Summary
    Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SEU in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (16616988..16622049)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene pseudo Neighboring gene pseudo

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001123962.2
    NM_103511.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein heterodimerization activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription coregulator activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in cellular response to external biotic stimulus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cellular response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within gynoecium development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within multicellular organism development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within plant ovule development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of flower development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to bacterium IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to cycloheximide IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to fungus IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to hypoxia IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to nematode IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to oxidative stress IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to silver ion IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    SEUSS transcriptional co-regulator
    NP_001117434.1
    • seuss (SEU); FUNCTIONS IN: protein binding, transcription cofactor activity, DNA binding, protein heterodimerization activity; INVOLVED IN: multicellular organismal development, gynoecium development, embryo development, ovule development, regulation of flower development; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_175051.1
    • seuss (SEU); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1); Has 74651 Blast hits to 25837 proteins in 1166 species: Archae - 31; Bacteria - 2985; Metazoa - 26009; Fungi - 8425; Plants - 3606; Viruses - 613; Other Eukaryotes - 32982 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16616988..16622049
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103511.4NP_175051.1  SEUSS transcriptional co-regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175051.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXE8, Q8W234, Q9MAR3
      UniProtKB/TrEMBL
      A0A7G2E1W2
      Conserved Domains (1) summary
      pfam01803
      Location:309563
      LIM_bind; LIM-domain binding protein
    2. NM_001123962.2NP_001117434.1  SEUSS transcriptional co-regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117434.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXE8, Q8W234, Q9MAR3
      UniProtKB/TrEMBL
      A0A7G2E1W2
      Conserved Domains (1) summary
      pfam01803
      Location:309563
      LIM_bind; LIM-domain binding protein