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    Homeodomain-like/winged-helix DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838326, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Homeodomain-like/winged-helix DNA-binding family protein
    Primary source
    TAIR:AT1G17520
    Locus tag
    AT1G17520
    See related
    Araport:AT1G17520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1L3.23; F1L3_23
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (6024636..6027565, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein Neighboring gene uncharacterized protein Neighboring gene translocase of inner mitochondrial membrane 23 Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
    2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    3. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
    4. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101614.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Homeodomain-like/winged-helix DNA-binding family protein
    NP_173195.2
    • Homeodomain-like/winged-helix DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G72740.1); Has 882 Blast hits to 875 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 89; Plants - 618; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6024636..6027565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332309.1 → NP_001321132.1  Homeodomain-like/winged-helix DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I7L1, Q8GWZ5, Q9LNQ2
      UniProtKB/TrEMBL
      A0A178WHA3, A0A1P8APY3, A0A384KXX2
      Conserved Domains (2) summary
      smart00526
      Location:124 → 189
      H15; Domain in histone families 1 and 5
      cd11660
      Location:7 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    2. NM_001332308.1 → NP_001321130.1  Homeodomain-like/winged-helix DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I7L1, Q8GWZ5, Q9LNQ2
      UniProtKB/TrEMBL
      A0A178WID5, A0A1P8APZ7, A0A384KVA3
      Conserved Domains (2) summary
      smart00526
      Location:124 → 189
      H15; Domain in histone families 1 and 5
      cd11660
      Location:7 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    3. NM_001332310.1 → NP_001321131.1  Homeodomain-like/winged-helix DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I7L1, Q8GWZ5, Q9LNQ2
      UniProtKB/TrEMBL
      A0A1P8AQ25
      Conserved Domains (2) summary
      smart00526
      Location:124 → 188
      H15; Domain in histone families 1 and 5
      cd11660
      Location:7 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    4. NM_101614.4 → NP_173195.2  Homeodomain-like/winged-helix DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173195.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I7L1, Q8GWZ5, Q9LNQ2
      UniProtKB/TrEMBL
      A0A178WGH1
      Conserved Domains (3) summary
      smart00526
      Location:124 → 188
      H15; Domain in histone families 1 and 5
      smart00717
      Location:5 → 56
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:7 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version

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