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    F-box/associated interaction domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841772, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/associated interaction domain protein
    Primary source
    TAIR:AT1G53360
    Locus tag
    AT1G53360
    See related
    Araport:AT1G53360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12M16.25; F12M16_25
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (19907179..19908548)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene DHHA1 domain protein Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene uncharacterized protein Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/associated interaction domain protein
    NP_683427.1
    • F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G53370.1); Has 907 Blast hits to 853 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 907; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19907179..19908548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333590.1 → NP_001320410.1  F-box/associated interaction domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HRG4, Q3ECR3, Q9MAG6
      UniProtKB/TrEMBL
      A0A5S9WLG5

    2. NM_148586.1 → NP_683427.1  F-box/associated interaction domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683427.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WLG5
      Conserved Domains (2) summary
      TIGR01640
      Location:99 → 310
      F_box_assoc_1; F-box protein interaction domain
      pfam08268
      Location:182 → 302
      FBA_3; F-box associated domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ECR3.3

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