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    GH9B1 glycosyl hydrolase 9B1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843408, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9B1
    Official Full Name
    glycosyl hydrolase 9B1
    Primary source
    TAIR:AT1G70710
    Locus tag
    AT1G70710
    See related
    Araport:AT1G70710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGH9B1; CEL1; CELLULASE 1; F5A18.11; F5A18_11; glycosyl hydrolase 9B1
    Summary
    endo-1,4-beta-glucanase. Involved in cell elongation.
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    Genomic context

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    See GH9B1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (26659129..26663337, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Receptor-like protein kinase-related family protein Neighboring gene TIFY domain/Divergent CCT motif family protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene Phosphoglucomutase/phosphomannomutase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of endo-1,4-beta-glucanase (cel1) in Arabidopsis thaliana is associated with plant growth, xylem development and cell wall thickening. Shani Z, et al. Plant Cell Rep, 2006 Oct. PMID 16758197
    2. Abnormal 'wrinkled' cell walls and retarded development of transgenic Arabidopsis thaliana plants expressing endo-1,4-beta-glucanase (cell) antisense. Tsabary G, et al. Plant Mol Biol, 2003 Jan. PMID 12602880
    3. Cloning and characterization of elongation specific endo-1,4-beta-glucanase (cel1) from Arabidopsis thaliana. Shani Z, et al. Plant Mol Biol, 1997 Aug. PMID 9290636
    4. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    5. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105739.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell wall modification involved in multidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9B1
    NP_177228.1
    • glycosyl hydrolase 9B1 (GH9B1); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cyclopentenone, cell wall modification involved in multidimensional cell growth; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B6 (TAIR:AT1G23210.1); Has 1758 Blast hits to 1741 proteins in 256 species: Archae - 2; Bacteria - 589; Metazoa - 188; Fungi - 19; Plants - 920; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26659129..26663337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105739.4 → NP_177228.1  glycosyl hydrolase 9B1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177228.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23696, O23697, Q9CAC1
      UniProtKB/TrEMBL
      A0A178W561, A0A5S9WT04
      Conserved Domains (1) summary
      PLN02308
      Location:1 → 492
      PLN02308; endoglucanase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAC1.1

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