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    VND7 vascular related NAC-domain protein 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843524, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VND7
    Official Full Name
    vascular related NAC-domain protein 7
    Primary source
    TAIR:AT1G71930
    Locus tag
    AT1G71930
    See related
    Araport:AT1G71930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ANAC030; Arabidopsis NAC domain containing protein 30; F17M19.8; F17M19_8; vascular related NAC-domain protein 7
    Summary
    Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.
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    Genomic context

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    See VND7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (27074702..27077991)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene HISTIDINE BIOSYNTHESIS 6B Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SNARE associated Golgi protein family Neighboring gene Proteinase inhibitor, propeptide Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Affinity-based high-resolution analysis of DNA binding by VASCULAR-RELATED NAC-DOMAIN7 via fluorescence correlation spectroscopy. Tamura T, et al. Plant J, 2019 Oct. PMID 31313414
    2. A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis. Li Z, et al. Plant Physiol, 2016 Oct. PMID 27566165, Free PMC Article
    3. A chemical biology approach reveals an opposite action between thermospermine and auxin in xylem development in Arabidopsis thaliana. Yoshimoto K, et al. Plant Cell Physiol, 2012 Apr. PMID 22345435
    4. WRKY15 Suppresses Tracheary Element Differentiation Upstream of VND7 During Xylem Formation. Ge S, et al. Plant Cell, 2020 Jul. PMID 32327537, Free PMC Article
    5. LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Ohashi-Ito K, et al. Plant Cell Physiol, 2018 May 1. PMID 29444288

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. WRKY15 Suppresses Tracheary Element Differentiation Upstream of VND7 During Xylem Formation.
      Title: WRKY15 Suppresses Tracheary Element Differentiation Upstream of VND7 During Xylem Formation.
    2. Data found that substitutions among the core nucleotides affected transcriptional regulation by VND7 in vivo, indicating that the core nucleotides contribute to vessel-element-specific gene expression.
      Title: Affinity-based high-resolution analysis of DNA binding by VASCULAR-RELATED NAC-DOMAIN7 via fluorescence correlation spectroscopy.
    3. AtGLR3.4-mediated Ca2+ influx may be involved in the regulation of seed germination under salt stress
      Title: LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    4. Data show that photosynthesis-related genes were down-regulated after vascular related NAC-domain protein 7 (VND7) induction.
      Title: A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis.
    5. VND7 transcription is a regulatory target of multiple classes of transcription factors.
      Title: Multiple classes of transcription factors regulate the expression of VASCULAR-RELATED NAC-DOMAIN7, a master switch of xylem vessel differentiation.
    6. Verticillium-infected Arabidopsis wild-type plants show higher drought stress tolerance compared with noninfected plants, whereas this effect is attenuated by suppression of VND7 activity.
      Title: Verticillium infection triggers VASCULAR-RELATED NAC DOMAIN7-dependent de novo xylem formation and enhances drought tolerance in Arabidopsis.
    7. VND7 regulates patterns of secondary cell wall deposition in vascular vessels.
      Title: VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation.
    8. A glucocorticoid-mediated posttranslational induction system of VND6 and VND7, is reported.
      Title: VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system.
    9. VASCULAR-RELATED NAC-DOMAIN PROTEIN6 (VND6) and VND7, which are transcription factors required for TE differentiation, determine ASL19 and ASL20 expression in immature tracheary elements (TEs).
      Title: ASYMMETRIC LEAVES2-LIKE19/LATERAL ORGAN BOUNDARIES DOMAIN30 and ASL20/LBD18 regulate tracheary element differentiation in Arabidopsis.
    10. transcription switch for plant metaxylem and protoxylem vessel formation. [VASCULAR-RELATED NAC-DOMAIN7 ] [Vnd7]
      Title: Transcription switches for protoxylem and metaxylem vessel formation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105851.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to auxin stimulus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protoxylem development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to brassinosteroid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cytokinin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to fungus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in xylan metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xylem development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xylem development TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in xylem vessel member cell differentiation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in xylem vessel member cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in xylem vessel member cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    vascular related NAC-domain protein 7
    NP_177338.1
    • vascular related NAC-domain protein 7 (VND7); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: vascular related NAC-domain protein 1 (TAIR:AT2G18060.1); Has 3020 Blast hits to 3015 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3006; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27074702..27077991
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334512.1 → NP_001323397.1  vascular related NAC-domain protein 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C8W9
      UniProtKB/TrEMBL
      A0A178WQ46, A0A5S9WRK0, A0A7G2E262
      Conserved Domains (1) summary
      pfam02365
      Location:10 → 137
      NAM; No apical meristem (NAM) protein

    2. NM_105851.2 → NP_177338.1  vascular related NAC-domain protein 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177338.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C8W9
      UniProtKB/TrEMBL
      A0A178WQ46, A0A5S9WRK0, A0A7G2E262
      Conserved Domains (1) summary
      pfam02365
      Location:10 → 137
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8W9.1

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