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    DNA directed RNA polymerase, 7 kDa subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841806, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA directed RNA polymerase, 7 kDa subunit
    Primary source
    TAIR:AT1G53690
    Locus tag
    AT1G53690
    See related
    Araport:AT1G53690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22G10.4; F22G10_4
    Summary
    Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (20042452..20043626, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene WAG 1 Neighboring gene putative aminoacyl-tRNA ligase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil. Qin Y, et al. PLoS Genet, 2009 Aug. PMID 19714218, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333605.1
    NM_001333606.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen tube growth IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA directed RNA polymerase, 7 kDa subunit
    NP_001319215.1
    • DNA directed RNA polymerase, 7 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: pollen tube growth, transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, sperm cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA polymerase Rbp10 (InterPro:IPR006591); BEST Arabidopsis thaliana protein match is: DNA directed RNA polymerase, 7 kDa subunit (TAIR:AT5G41010.1); Has 279 Blast hits to 279 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 54; Plants - 68; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20042452..20043626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333605.1 → NP_001319215.1  DNA directed RNA polymerase, 7 kDa subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C8M4
      UniProtKB/TrEMBL
      A0A178W9H9, A0A1P8AV79, A0A384LER3
      Conserved Domains (1) summary
      smart00659
      Location:17 → 59
      RPOLCX; RNA polymerase subunit CX

    2. NM_001333606.1 → NP_001322822.1  DNA directed RNA polymerase, 7 kDa subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C8M4
      UniProtKB/TrEMBL
      A0A178W9H9, A0A1P8AV79, A0A384LER3
      Conserved Domains (1) summary
      smart00659
      Location:17 → 59
      RPOLCX; RNA polymerase subunit CX
    Nucleotide Protein
    Heading Accession and Version

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