U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819615, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    AT hook motif DNA-binding family protein
    Primary source
    TAIR:AT3G04590
    Locus tag
    AT3G04590
    See related
    Araport:AT3G04590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AHL14; AT-hook motif nuclear localized protein 14; F7O18.6; F7O18_6
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (1238853..1241804, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 19 Neighboring gene Signal transduction histidine kinase, hybrid-type, ethylene sensor Neighboring gene Nucleotidylyl transferase superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_111330.5
    NM_180181.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    AT hook motif DNA-binding family protein
    NP_187109.2
    • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT5G28590.1); Has 3387 Blast hits to 3069 proteins in 223 species: Archae - 0; Bacteria - 59; Metazoa - 1696; Fungi - 298; Plants - 799; Viruses - 15; Other Eukaryotes - 520 (source: NCBI BLink).
    NP_850512.2
    • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT2G33620.4); Has 3258 Blast hits to 2940 proteins in 204 species: Archae - 0; Bacteria - 25; Metazoa - 1636; Fungi - 293; Plants - 789; Viruses - 3; Other Eukaryotes - 512 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1238853..1241804 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111330.5 → NP_187109.2  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187109.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4X7, Q9SR16
      UniProtKB/TrEMBL
      A0A178VIN7, A0A5S9X950
      Conserved Domains (1) summary
      cd11378
      Location:172 → 283
      DUF296; Domain of unknown function found in archaea, bacteria, and plants

    2. NM_180181.4 → NP_850512.2  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850512.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J4T1
      Conserved Domains (1) summary
      pfam03479
      Location:174 → 283
      DUF296; Domain of unknown function (DUF296)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1L4X7.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.