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    MYB107 myb domain protein 107 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821178, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB107
    Official Full Name
    myb domain protein 107
    Primary source
    TAIR:AT3G02940
    Locus tag
    AT3G02940
    See related
    Araport:AT3G02940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB107; F13E7.11; F13E7_11; myb domain protein 107
    Summary
    Encodes a putative transcription factor (MYB107).
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    Genomic context

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    See MYB107 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (661849..664011)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Replication protein A, subunit RPA32 Neighboring gene weak chloroplast movement under blue light protein (DUF827) Neighboring gene Tho complex subunit 7/Mft1p Neighboring gene Heavy metal transport/detoxification superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The MYB107 Transcription Factor Positively Regulates Suberin Biosynthesis. Gou M, et al. Plant Physiol, 2017 Feb. PMID 27965303, Free PMC Article
    2. AtMYB92 enhances fatty acid synthesis and suberin deposition in leaves of Nicotiana benthamiana. To A, et al. Plant J, 2020 Jul. PMID 32246506
    3. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    4. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337450.1
    NM_111164.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 107
    NP_186944.1
    • myb domain protein 107 (MYB107); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 9 (TAIR:AT5G16770.2); Has 9059 Blast hits to 8356 proteins in 507 species: Archae - 0; Bacteria - 0; Metazoa - 783; Fungi - 490; Plants - 6000; Viruses - 3; Other Eukaryotes - 1783 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      661849..664011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337449.1 → NP_001326400.1  myb domain protein 107 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBX2, A0A1I9LP59

    2. NM_111164.3 → NP_186944.1  myb domain protein 107 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186944.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBX2, A0A654F3L2, Q9LDI5
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 128
      PLN03091; hypothetical protein; Provisional

    3. NM_001337450.1 → NP_001326399.1  myb domain protein 107 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBX2, A0A654F3L2, Q9LDI5
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 128
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
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