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    RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819913, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein
    Primary source
    TAIR:AT3G07250
    Locus tag
    AT3G07250
    See related
    Araport:AT3G07250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (2303075..2306615, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SMAD/FHA domain-containing protein Neighboring gene wound-responsive protein-like protein Neighboring gene nuclear transport factor 2/RNA recognition motif protein Neighboring gene SMAD/FHA domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein
    NP_001319490.1
    • nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT5G48650.1); Has 5020 Blast hits to 2878 proteins in 309 species: Archae - 0; Bacteria - 77; Metazoa - 2136; Fungi - 614; Plants - 1253; Viruses - 84; Other Eukaryotes - 856 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2303075..2306615 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337698.1 → NP_001319490.1  RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X9X8, A0A654F6L7, F4JED3
    Nucleotide Protein
    Heading Accession and Version

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