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    hypothetical protein (DUF220) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838967, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF220)
    Primary source
    TAIR:AT1G23570
    Locus tag
    AT1G23570
    See related
    Araport:AT1G23570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28C11.33
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (8354806..8356507, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene OBP32pep, putative (DUF220) Neighboring gene transmembrane protein, putative (Domain of unknown function DUF220) Neighboring gene OBP32pep protein, putative (Domain of unknown function DUF220)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084118.3
    NM_001123868.2
    NM_102206.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF220)
    NP_001077587.1
    • Domain of unknown function (DUF220); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23580.1); Has 171 Blast hits to 155 proteins in 28 species: Archae - 0; Bacteria - 29; Metazoa - 2; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001117340.1
    • Domain of unknown function (DUF220); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_564198.3
    • Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8354806..8356507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084118.3 → NP_001077587.1  hypothetical protein (DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077587.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VR88, A0ME88, Q1PFT1
      Conserved Domains (1) summary
      pfam02713
      Location:110 → 182
      DUF220; Domain of unknown function DUF220

    2. NM_001123868.2 → NP_001117340.1  hypothetical protein (DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117340.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMX6, B3H789
      Conserved Domains (1) summary
      pfam02713
      Location:33 → 105
      DUF220; Domain of unknown function DUF220

    3. NM_102206.4 → NP_564198.3  hypothetical protein (DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564198.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0ME88, B3H736
      Conserved Domains (1) summary
      pfam02713
      Location:108 → 180
      DUF220; Domain of unknown function DUF220
    Nucleotide Protein
    Heading Accession and Version

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