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    Radical SAM superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821500, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Radical SAM superfamily protein
    Primary source
    TAIR:AT3G19630
    Locus tag
    AT3G19630
    See related
    Araport:AT3G19630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (6818387..6820762, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene beta-1,4-xylosidase Neighboring gene Glycosyl hydrolase family protein Neighboring gene magnesium transporter 4 Neighboring gene cyclin-like protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112853.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Radical SAM superfamily protein
    NP_188597.1
    • Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT1G60230.1); Has 6931 Blast hits to 6927 proteins in 2338 species: Archae - 5; Bacteria - 5129; Metazoa - 1; Fungi - 1; Plants - 138; Viruses - 3; Other Eukaryotes - 1654 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6818387..6820762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112853.5 → NP_188597.1  Radical SAM superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188597.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VB15, Q84JV6
      Conserved Domains (1) summary
      COG0820
      Location:7 → 354
      RlmN; Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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