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    Melibiase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822242, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Melibiase family protein
    Primary source
    TAIR:AT3G26380
    Locus tag
    AT3G26380
    See related
    Araport:AT3G26380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (9660006..9663325)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S21 family protein Neighboring gene O-fucosyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Heterologous expression and characterization of an Arabidopsis β-l-arabinopyranosidase and α-d-galactosidases acting on β-l-arabinopyranosyl residues. Imaizumi C, et al. J Exp Bot, 2017 Jul 20. PMID 28981776, Free PMC Article
    2. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At3g26380.1 role in the hydrolysis of beta-l-arabinopyranosyl residues
      Title: Heterologous expression and characterization of an Arabidopsis β-l-arabinopyranosidase and α-d-galactosidases acting on β-l-arabinopyranosyl residues.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001338800.1
    NM_113545.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables polysaccharide binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within arabinogalactan protein metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    Melibiase family protein
    NP_189269.2
    • Melibiase family protein; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Melibiase family protein (TAIR:AT3G56310.1); Has 1323 Blast hits to 1316 proteins in 313 species: Archae - 2; Bacteria - 513; Metazoa - 306; Fungi - 224; Plants - 205; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9660006..9663325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113545.4 → NP_189269.2  Melibiase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189269.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGY4, A0A654FCS5, F4JCI4
      Conserved Domains (1) summary
      PLN02899
      Location:12 → 645
      PLN02899; alpha-galactosidase

    2. NM_001338800.1 → NP_001327884.1  Melibiase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTP3
    Nucleotide Protein
    Heading Accession and Version

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