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    transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820377, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane)
    Primary source
    TAIR:AT3G12030
    Locus tag
    AT3G12030
    See related
    Araport:AT3G12030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (3834361..3835107, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene S-locus related protein SLR1, putative (S1) Neighboring gene C18orf8 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DNA-3-methyladenine glycosylase (MAG) Neighboring gene Aha1 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112037.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane)
    NP_566409.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF106, transmembrane (InterPro:IPR002809), Uncharacterised conserved protein UCP023322, transmembrane eukaryotic (InterPro:IPR008559); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF106, transmembrane (TAIR:AT5G06660.1); Has 261 Blast hits to 261 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3834361..3835107 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112037.3 → NP_566409.1  transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566409.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFR5, A0A384L106, Q8LE05, Q9LHL8
      Conserved Domains (1) summary
      pfam01956
      Location:16 → 175
      DUF106; Integral membrane protein DUF106
    Nucleotide Protein
    Heading Accession and Version

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