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    PDCB3 plasmodesmata callose-binding protein 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838446, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PDCB3
    Official Full Name
    plasmodesmata callose-binding protein 3
    Primary source
    TAIR:AT1G18650
    Locus tag
    AT1G18650
    See related
    Araport:AT1G18650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25I16.1; F25I16_1; plasmodesmata callose-binding protein 3
    Summary
    Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.
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    Genomic context

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    See PDCB3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (6418838..6421188, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LONGIFOLIA protein Neighboring gene glycine-rich RNA-binding protein 6 Neighboring gene 3-phosphoserine phosphatase Neighboring gene zinc finger (C3HC4-type RING finger) family protein Neighboring gene Protein kinase superfamily protein Neighboring gene HNH endonuclease domain-containing protein Neighboring gene Galactosyl transferase GMA12/MNN10 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking. Simpson C, et al. Plant Cell, 2009 Feb. PMID 19223515, Free PMC Article
    2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332355.1
    NM_101723.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables (1->3)-beta-D-glucan binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plasmodesmata callose-binding protein 3
    NP_564059.1
    • plasmodesmata callose-binding protein 3 (PDCB3); CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1); Has 1473 Blast hits to 1425 proteins in 72 species: Archae - 4; Bacteria - 6; Metazoa - 5; Fungi - 46; Plants - 1391; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6418838..6421188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101723.4 → NP_564059.1  plasmodesmata callose-binding protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564059.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZ86
      UniProtKB/TrEMBL
      A0A5S9V2D4, A0A654EB30
      Conserved Domains (1) summary
      smart00768
      Location:20 → 104
      X8; Possibly involved in carbohydrate binding

    2. NM_001332355.1 → NP_001321300.1  plasmodesmata callose-binding protein 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIT1, A0A1P8AQH8, A0A384L0F8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZ86.1

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