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    GIF3 GRF1-interacting factor 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827995, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GIF3
    Official Full Name
    GRF1-interacting factor 3
    Primary source
    TAIR:AT4G00850
    Locus tag
    AT4G00850
    See related
    Araport:AT4G00850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A_TM018A10.22; A_TM018A10_22; GRF1-interacting factor 3; T18A10.15; T18A10_15
    Summary
    Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA
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    Genomic context

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    See GIF3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (357345..359337)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene IQ-domain 17 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene DHHC-type zinc finger family protein Neighboring gene monopolar spindle protein (DUF1138) Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Spatio-temporal distribution patterns of GRF-INTERACTING FACTOR expression and leaf size control. Lee BH, et al. Plant Signal Behav, 2014. PMID 25763702, Free PMC Article
    2. The Arabidopsis thaliana GRF-INTERACTING FACTOR gene family plays an essential role in control of male and female reproductive development. Lee BH, et al. Dev Biol, 2014 Feb 1. PMID 24355747
    3. The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties. Lee BH, et al. Plant Physiol, 2009 Oct. PMID 19648231, Free PMC Article
    4. A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis. Kim JH, et al. Proc Natl Acad Sci U S A, 2004 Sep 7. PMID 15326298, Free PMC Article
    5. GIF Transcriptional Coregulators Control Root Meristem Homeostasis. Ercoli MF, et al. Plant Cell, 2018 Feb. PMID 29352064, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340272.1
    NM_116311.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coactivator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GRF1-interacting factor 3
    NP_567194.1
    • GRF1-interacting factor 3 (GIF3); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 2 (TAIR:AT1G01160.1); Has 414 Blast hits to 414 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 279; Fungi - 27; Plants - 81; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      357345..359337
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116311.4 → NP_567194.1  GRF1-interacting factor 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567194.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23091, Q93VH6
      UniProtKB/TrEMBL
      A0A178USC5, A0A5S9XNP6, A0A654FKR1
      Conserved Domains (1) summary
      pfam05030
      Location:21 → 74
      SSXT; SSXT protein (N-terminal region)

    2. NM_001340272.1 → NP_001328370.1  GRF1-interacting factor 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4F6, A0A5S9XNP6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93VH6.1

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