Calcium-binding EF-hand family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Calcium-binding EF-hand family protein
Primary source: TAIR:AT4G13440
Locus tag: AT4G13440
See related: Araport:AT4G13440
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T9E8.180; T9E8_180
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 3

Sequence:: Chromosome: 4; NC_003075.7 (7810014..7812610)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Calcium-binding EF-hand family protein

NP_193080.1

Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); Has 160 Blast hits to 157 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 8; Plants - 88; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

7810014..7812610

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001340862.1 → NP_001328777.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V266, A0A178V3X7, A0A1P8B5Q0, A0A384KVA6

Conserved Domains (2) summary

pfam13499
Location:27 → 82

EF-hand_7; EF-hand domain pair

cl00295
Location:91 → 132

ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...
NM_117418.2 → NP_193080.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_193080.1

Status: REVIEWED

UniProtKB/TrEMBL

Q9T0L5

Conserved Domains (4) summary

cd00051
Location:27 → 80

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

pfam13499
Location:25 → 81

EF-hand_7; EF-hand domain pair

cl00295
Location:91 → 132

ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...

cl08302
Location:2 → 48

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...