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    hypothetical protein (DUF789) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828930, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF789)
    Primary source
    TAIR:AT4G28150
    Locus tag
    AT4G28150
    See related
    Araport:AT4G28150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26K10.30; F26K10_30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (13977303..13979487, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase 6 Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341905.1
    NM_118955.3
    NM_179132.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF789)
    NP_567798.1
    • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849463.1
    • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1); Has 255 Blast hits to 253 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13977303..13979487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118955.3 → NP_567798.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567798.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V234, A0A5S9XWJ8, Q8GUN3
      Conserved Domains (1) summary
      pfam05623
      Location:8 → 272
      DUF789; Protein of unknown function (DUF789)

    2. NM_001341905.1 → NP_001328078.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3K4

    3. NM_179132.1 → NP_849463.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849463.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V234, A0A5S9XWJ8, Q0WUN1
      Conserved Domains (1) summary
      pfam05623
      Location:8 → 270
      DUF789; Protein of unknown function (DUF789)
    Nucleotide Protein
    Heading Accession and Version

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