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    target of trans acting-siR480/255 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829099, updated on 18-Sep-2024

    Summary

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    Official Full Name
    target of trans acting-siR480/255 protein
    Primary source
    TAIR:AT4G29770
    Locus tag
    AT4G29770
    See related
    Araport:AT4G29770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27B13.10; F27B13_10; HEAT-INDUCED TAS1 TARGET 1; HTT1
    Summary
    Target of trans acting-siR480/255. Testing.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (14575718..14577643)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CRS1 / YhbY (CRM) domain-containing protein Neighboring gene ncRNA Neighboring gene target of trans acting-siR480/255 protein Neighboring gene miscRNA Neighboring gene nuclease

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Li S, et al. Plant Cell, 2014 Apr. PMID 24728648, Free PMC Article
    2. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001160805.1
    NM_119123.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heat acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to heat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    target of trans acting-siR480/255 protein
    NP_001154277.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1); Has 45 Blast hits to 45 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_567833.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14575718..14577643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160805.1 → NP_001154277.1  target of trans acting-siR480/255 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154277.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UU84

    2. NM_119123.3 → NP_567833.1  target of trans acting-siR480/255 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567833.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNR4, Q8LFW5, Q9SZQ0
      UniProtKB/TrEMBL
      A0A178UU84
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LFW5.1

    Gene LinkOut

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