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    AGL21 AGAMOUS-like 21 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829950, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGL21
    Official Full Name
    AGAMOUS-like 21
    Primary source
    TAIR:AT4G37940
    Locus tag
    AT4G37940
    See related
    Araport:AT4G37940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGAMOUS-like 21; F20D10.60; F20D10_60
    Summary
    encodes a MADS box protein, highly expressed in the root.
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    Genomic context

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    See AGL21 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (17835217..17838969, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex Neighboring gene serine transhydroxymethyltransferase 1 Neighboring gene Rhamnogalacturonate lyase family protein Neighboring gene cinnamyl alcohol dehydrogenase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MADS-box transcription factor AGL21 regulates lateral root development and responds to multiple external and physiological signals. Yu LH, et al. Mol Plant, 2014 Nov. PMID 25122697, Free PMC Article
    2. Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression. Yu LH, et al. Mol Plant, 2017 Jun 5. PMID 28438576
    3. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Lee JY, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16581911, Free PMC Article
    4. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. de Folter S, et al. Plant Cell, 2005 May. PMID 15805477, Free PMC Article
    5. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Parenicová L, et al. Plant Cell, 2003 Jul. PMID 12837945, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression
      Title: Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    2. AGL21 may be involved in various environmental and physiological signals-mediated lateral root development and growth.
      Title: MADS-box transcription factor AGL21 regulates lateral root development and responds to multiple external and physiological signals.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342462.1
    NM_001342463.1
    NM_001342464.1
    NM_119955.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AGAMOUS-like 21
    NP_195507.1
    • AGAMOUS-like 21 (AGL21); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, C globular stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 17 (TAIR:AT2G22630.1); Has 7243 Blast hits to 7239 proteins in 914 species: Archae - 0; Bacteria - 6; Metazoa - 648; Fungi - 305; Plants - 6180; Viruses - 2; Other Eukaryotes - 102 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17835217..17838969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119955.3 → NP_195507.1  AGAMOUS-like 21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195507.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q548I8, Q9SZJ6
      UniProtKB/TrEMBL
      A0A5S9XZN1, A0A654FWZ9, Q29PR0
      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:81 → 171
      K-box; K-box region

    2. NM_001342463.1 → NP_001328890.1  AGAMOUS-like 21 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B622

    3. NM_001342462.1 → NP_001328889.1  AGAMOUS-like 21 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UVY5, A0A178UYK5, A0A1P8B617, A0A384LNP9

    4. NM_001342464.1 → NP_001328888.1  AGAMOUS-like 21 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B618, A0A654FWZ9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZJ6.1

    Gene LinkOut

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