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    DnaJ/Hsp40 cysteine-rich domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823919, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DnaJ/Hsp40 cysteine-rich domain superfamily protein
    Primary source
    TAIR:AT3G47650
    Locus tag
    AT3G47650
    See related
    Araport:AT3G47650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (17569424..17570607)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene translocator assembly/maintenance protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant RuBisCo assembly in E. coli with five chloroplast chaperones including BSD2. Aigner H, et al. Science, 2017 Dec 8. PMID 29217567
    2. Structural insights into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly. Wang R, et al. Mol Plant, 2023 Dec 4. PMID 37853692
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_114633.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein folding chaperone IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein folding chaperone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in chaperone-mediated protein folding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in chaperone-mediated protein folding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in ribulose bisphosphate carboxylase complex assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in ribulose bisphosphate carboxylase complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in ribulose bisphosphate carboxylase complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    part_of protein folding chaperone complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of protein folding chaperone complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    DnaJ/Hsp40 cysteine-rich domain superfamily protein
    NP_190349.1
    • DnaJ/Hsp40 cysteine-rich domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 88 Blast hits to 88 proteins in 28 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17569424..17570607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114633.4 → NP_190349.1  DnaJ/Hsp40 cysteine-rich domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190349.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VHR7, Q9SN73
      UniProtKB/TrEMBL
      A0A384KD29, A0A5S9XKE1
      Conserved Domains (1) summary
      PTZ00037
      Location:71 → 125
      PTZ00037; DnaJ_C chaperone protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SN73.1

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