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    WEB family protein (DUF827) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824335, updated on 18-Sep-2024

    Summary

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    Official Full Name
    WEB family protein (DUF827)
    Primary source
    TAIR:AT3G51720
    Locus tag
    AT3G51720
    See related
    Araport:AT3G51720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (19184926..19186660)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein Neighboring gene saposin B domain-containing protein Neighboring gene inflorescence meristem receptor-like kinase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115031.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WEB family protein (DUF827)
    NP_190740.1
    • Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT2G38370.1); Has 6489 Blast hits to 5290 proteins in 766 species: Archae - 144; Bacteria - 987; Metazoa - 2963; Fungi - 406; Plants - 677; Viruses - 9; Other Eukaryotes - 1303 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19184926..19186660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115031.2 → NP_190740.1  WEB family protein (DUF827) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190740.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L8L2, Q9SCT6
      UniProtKB/TrEMBL
      A0A178VAE9, A0A5S9XJX4
      Conserved Domains (2) summary
      COG1196
      Location:69 → 277
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05701
      Location:11 → 127
      WEMBL; Weak chloroplast movement under blue light
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCT6.1

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