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    START (StAR-related lipid-transfer) lipid-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830617, updated on 18-Sep-2024

    Summary

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    Official Full Name
    START (StAR-related lipid-transfer) lipid-binding domain-containing protein
    Primary source
    TAIR:AT5G07260
    Locus tag
    AT5G07260
    See related
    Araport:AT5G07260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28J14.200; T28J14_200
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (2277813..2280281)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene IQ-domain 24 Neighboring gene RHOMBOID-like protein 3 Neighboring gene uncharacterized protein Neighboring gene Leucine-rich repeat transmembrane protein kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203319.1
    NM_120808.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    START (StAR-related lipid-transfer) lipid-binding domain-containing protein
    NP_001190248.1
    • START (StAR-related lipid-transfer) lipid-binding domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: START (StAR-related lipid-transfer) lipid-binding domain (TAIR:AT4G26920.1).
    NP_196343.2
    • START (StAR-related lipid-transfer) lipid-binding domain; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: START (StAR-related lipid-transfer) lipid-binding domain (TAIR:AT4G26920.1); Has 440 Blast hits to 414 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2277813..2280281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203319.1 → NP_001190248.1  START (StAR-related lipid-transfer) lipid-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190248.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4C7, F4K6M0
      Conserved Domains (1) summary
      cl14643
      Location:99 → 296
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    2. NM_120808.3 → NP_196343.2  START (StAR-related lipid-transfer) lipid-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196343.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4C7, A0A654FZI2, Q84JD1
      Conserved Domains (1) summary
      cl14643
      Location:99 → 296
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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