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    peptidoglycan-binding LysM domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830716, updated on 18-Sep-2024

    Summary

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    Official Full Name
    peptidoglycan-binding LysM domain-containing protein
    Primary source
    TAIR:AT5G08200
    Locus tag
    AT5G08200
    See related
    Araport:AT5G08200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L15.5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (2637988..2640936)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nuclear factor Y, subunit B12 Neighboring gene tudor/PWWP/MBT domain protein Neighboring gene microRNA ath-MIR834 precursor Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120903.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    peptidoglycan-binding LysM domain-containing protein
    NP_196437.2
    • peptidoglycan-binding LysM domain-containing protein; BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G23130.1); Has 390 Blast hits to 387 proteins in 72 species: Archae - 0; Bacteria - 10; Metazoa - 233; Fungi - 7; Plants - 113; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2637988..2640936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120903.3 → NP_196437.2  peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196437.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U927, A0A5S9Y2G4, Q8L708
      Conserved Domains (1) summary
      cd00118
      Location:86 → 122
      LysM; Lysin Motif is a small domain involved in binding peptidoglycan
    Nucleotide Protein
    Heading Accession and Version

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