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    DNAJ heat shock N-terminal domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832425, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNAJ heat shock N-terminal domain-containing protein
    Primary source
    TAIR:AT5G23590
    Locus tag
    AT5G23590
    See related
    Araport:AT5G23590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQM1.14; MQM1_14
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (7953529..7956875, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene XS domain-containing protein / XS zinc finger domain-containing protein-like protein Neighboring gene Transmembrane CLPTM1 family protein Neighboring gene calmodulin-like domain protein kinase 9 Neighboring gene RNA 2'-phosphotransferase, Tpt1 / KptA family Neighboring gene DYAD protein Neighboring gene phosphate deficiency response 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036853.1
    NM_122265.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNAJ heat shock N-terminal domain-containing protein
    NP_001031930.1
    • DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), RNA recognition motif, RNP-1 (InterPro:IPR000504), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARG1-like 2 (TAIR:AT1G59980.1); Has 16747 Blast hits to 16541 proteins in 2695 species: Archae - 126; Bacteria - 6883; Metazoa - 3195; Fungi - 1541; Plants - 1234; Viruses - 13; Other Eukaryotes - 3755 (source: NCBI BLink).
    NP_197749.2
    • DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), RNA recognition motif, RNP-1 (InterPro:IPR000504), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARG1-like 2 (TAIR:AT1G59980.1); Has 16747 Blast hits to 16541 proteins in 2695 species: Archae - 126; Bacteria - 6883; Metazoa - 3195; Fungi - 1541; Plants - 1234; Viruses - 13; Other Eukaryotes - 3755 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7953529..7956875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122265.5 → NP_197749.2  DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197749.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUG2, A0A5S9Y7Q7, Q8L7M3
      Conserved Domains (3) summary
      COG2214
      Location:1 → 177
      CbpA; Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]
      pfam00226
      Location:6 → 73
      DnaJ; DnaJ domain
      cd12429
      Location:173 → 245
      RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

    2. NM_001036853.1 → NP_001031930.1  DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031930.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUG2, A0A5S9Y7Q7, Q8L7M3
      Conserved Domains (3) summary
      COG2214
      Location:1 → 177
      CbpA; Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]
      pfam00226
      Location:6 → 73
      DnaJ; DnaJ domain
      cd12429
      Location:173 → 245
      RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17
    Nucleotide Protein
    Heading Accession and Version

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