U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Protein prenylyltransferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833685, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Protein prenylyltransferase superfamily protein
    Primary source
    TAIR:AT5G37130
    Locus tag
    AT5G37130
    See related
    Araport:AT5G37130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJG14.18; MJG14_18
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    20
    Sequence:
    Chromosome: 5; NC_003076.8 (14681348..14686754)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_123072.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Protein prenylyltransferase superfamily protein
    NP_198529.3
    • Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G17270.1); Has 5505 Blast hits to 3950 proteins in 698 species: Archae - 506; Bacteria - 2164; Metazoa - 520; Fungi - 303; Plants - 259; Viruses - 0; Other Eukaryotes - 1753 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      14681348..14686754
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123072.4 → NP_198529.3  Protein prenylyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198529.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y8L3, F4K5W3
      Conserved Domains (3) summary
      sd00006
      Location:603 → 628
      TPR; TPR repeat [structural motif]
      pfam07719
      Location:601 → 633
      TPR_2; Tetratricopeptide repeat
      pfam13414
      Location:603 → 664
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools