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    EMB506 Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834014, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB506
    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT5G40160
    Locus tag
    AT5G40160
    See related
    Araport:AT5G40160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMB139; EMBRYO DEFECTIVE 139; embryo defective 506; MSN9.60; MSN9_60
    Summary
    Encodes ankyrin repeat protein EMB506. Mutations in this locus result in embryo lethality.
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    Genomic context

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    See EMB506 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (16062479..16064689, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein with ARM repeat domain-containing protein Neighboring gene Peroxidase superfamily protein Neighboring gene peroxidase Neighboring gene Defensin-like (DEFL) family protein Neighboring gene receptor like protein 54 Neighboring gene Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Uncovering the post-embryonic role of embryo essential genes in Arabidopsis using the controlled induction of visibly marked genetic mosaics: EMB506, an illustration. Latvala-Kilby SM, et al. Plant Mol Biol, 2006 May. PMID 16786300
    2. AKRP and EMB506 are two ankyrin repeat proteins essential for plastid differentiation and plant development in Arabidopsis. Garcion C, et al. Plant J, 2006 Dec. PMID 17092312
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. EMB506 gene expression is required for correct cotyledon-, true leaf- and cauline leaf margin development.
      Title: Uncovering the post-embryonic role of embryo essential genes in Arabidopsis using the controlled induction of visibly marked genetic mosaics: EMB506, an illustration.
    2. Results lead to the conclusion that EMB506 and AKRP are involved in crucial and tightly controlled events in plastid differentiation linked to cell differentiation, morphogenesis and organogenesis during the plant life cycle.
      Title: AKRP and EMB506 are two ankyrin repeat proteins essential for plastid differentiation and plant development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001344316.1
    NM_123380.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ankyrin repeat family protein
    NP_198832.1
    • embryo defective 506 (EMB506); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 90387 Blast hits to 29284 proteins in 1374 species: Archae - 134; Bacteria - 8440; Metazoa - 46466; Fungi - 7182; Plants - 3258; Viruses - 1346; Other Eukaryotes - 23561 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16062479..16064689 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123380.3 → NP_198832.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198832.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SQK3
      UniProtKB/TrEMBL
      A0A178UQ54, A0A5S9Y9X7, A0A654G6J0
      Conserved Domains (3) summary
      sd00045
      Location:184 → 215
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:153 → 205
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:189 → 280
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_001344316.1 → NP_001331101.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCV8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SQK3.1

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