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    bromodomain testis-specific protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834059, updated on 18-Sep-2024

    Summary

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    Official Full Name
    bromodomain testis-specific protein
    Primary source
    TAIR:AT5G40600
    Locus tag
    AT5G40600
    See related
    Araport:AT5G40600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNF13.13; MNF13_13
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (16253469..16256829, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Surfeit locus protein 2 (SURF2) Neighboring gene 20S proteasome beta subunit PBB2 Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene NAD-dependent glycerol-3-phosphate dehydrogenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123424.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    bromodomain testis-specific protein
    NP_198876.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16253469..16256829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344347.1 → NP_001330986.1  bromodomain testis-specific protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0MFK6, Q45GG8

    2. NM_001344346.1 → NP_001330988.1  bromodomain testis-specific protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCI3, A0A7G2FDJ0

    3. NM_001344345.1 → NP_001330987.1  bromodomain testis-specific protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEV2, A0A1P8BCH8

    4. NM_123424.2 → NP_198876.2  bromodomain testis-specific protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198876.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0MFK6, F4KIP2
      Conserved Domains (1) summary
      pfam17035
      Location:251 → 316
      BET; Bromodomain extra-terminal - transcription regulation
    Nucleotide Protein
    Heading Accession and Version

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