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    Cysteine/Histidine-rich C1 domain family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834233, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cysteine/Histidine-rich C1 domain family protein
    Primary source
    TAIR:AT5G42280
    Locus tag
    AT5G42280
    See related
    Araport:AT5G42280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K5J14.8; K5J14_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (16905202..16908059, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene beta glucosidase 12 Neighboring gene miscRNA Neighboring gene FtsH extracellular protease family Neighboring gene transcription activator-like protein Neighboring gene ubiquitin-like protein 5 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene Zn-dependent exopeptidases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123593.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cysteine/Histidine-rich C1 domain family protein
    NP_199043.1
    • Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16905202..16908059 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344441.1 → NP_001330864.1  Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BC49

    2. NM_123593.2 → NP_199043.1  Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199043.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K1I0, Q9FH01
      Conserved Domains (1) summary
      pfam03107
      Location:587 → 616
      C1_2; C1 domain
    Nucleotide Protein
    Heading Accession and Version

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