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    COP1-interacting protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834349, updated on 18-Sep-2024

    Summary

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    Official Full Name
    COP1-interacting protein-like protein
    Primary source
    TAIR:AT5G43310
    Locus tag
    AT5G43310
    See related
    Araport:AT5G43310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNL12.14; MNL12_14
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (17379486..17385596, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 49 Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene casein kinase I-like 8 Neighboring gene Lactate/malate dehydrogenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    2. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203530.1
    NM_001203531.2
    NM_123697.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    COP1-interacting protein-like protein
    NP_001190459.1
    • COP1-interacting protein-related; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2).
    NP_001190460.1
    • COP1-interacting protein-related; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2).
    NP_001190461.1
    • COP1-interacting protein-related; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2).
    NP_568624.1
    • COP1-interacting protein-related; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17379486..17385596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203532.2 → NP_001190461.1  COP1-interacting protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190461.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7P6, F4K5Y4

    2. NM_001344479.1 → NP_001331953.1  COP1-interacting protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFE3, A0A654G7P6

    3. NM_001203531.2 → NP_001190460.1  COP1-interacting protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190460.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7P6, F4K5Y6

    4. NM_001203530.1 → NP_001190459.1  COP1-interacting protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190459.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7P6, F4K5Y6

    5. NM_123697.1 → NP_568624.1  COP1-interacting protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568624.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K5Y5, Q9FHR5
    Nucleotide Protein
    Heading Accession and Version

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