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    ubiquitin-associated (UBA)/TS-N domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834927, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ubiquitin-associated (UBA)/TS-N domain protein
    Primary source
    TAIR:AT5G48690
    Locus tag
    AT5G48690
    See related
    Araport:AT5G48690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24G6.2; K24G6_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (19747026..19749061, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA-Lys Neighboring gene Sterile alpha motif (SAM) domain-containing protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125925.1
    NM_001344799.1
    NM_124246.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-associated (UBA)/TS-N domain protein
    NP_001119397.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_199680.2
    • CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 7001 Blast hits to 5165 proteins in 492 species: Archae - 9; Bacteria - 505; Metazoa - 2653; Fungi - 905; Plants - 287; Viruses - 19; Other Eukaryotes - 2623 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19747026..19749061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124246.3 → NP_199680.2  ubiquitin-associated (UBA)/TS-N domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199680.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YCA9, Q5XV09, Q9FKC7
      Conserved Domains (2) summary
      cd10461
      Location:209 → 316
      PUB_UBA_plant; PNGase/UBA or UBX (PUB) domain of plant Ubiquitin-associated (UBA) domain containing proteins
      cd14290
      Location:11 → 59
      UBA_PUB_plant; UBA domain found in plant PNGase/UBA or UBX (PUB) domain-containing proteins

    2. NM_001344799.1 → NP_001332692.1  ubiquitin-associated (UBA)/TS-N domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T3E4, Q5XV08

    3. NM_001125925.1 → NP_001119397.1  ubiquitin-associated (UBA)/TS-N domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119397.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K371
      Conserved Domains (1) summary
      cd10461
      Location:159 → 266
      PUB_UBA_plant; PNGase/UBA or UBX (PUB) domain of plant Ubiquitin-associated (UBA) domain containing proteins
    Nucleotide Protein
    Heading Accession and Version

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