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    DNA primase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835357, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA primase
    Primary source
    TAIR:AT5G52800
    Locus tag
    AT5G52800
    See related
    Araport:AT5G52800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXC20.1; MXC20_1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (21395944..21399419)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene ncRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene tRNA-Lys Neighboring gene WD-40 repeat family protein / notchless protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036987.1
    NM_001161303.1
    NM_124658.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA primase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in error-prone translesion synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA primase
    NP_001032064.1
    • DNA primases; Has 160 Blast hits to 149 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 0; Plants - 37; Viruses - 8; Other Eukaryotes - 40 (source: NCBI BLink).
    NP_001154775.1
    • DNA primases; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA primase, UL52/UL70 type, Herpesviridae (InterPro:IPR004340); Has 201 Blast hits to 173 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 45; Viruses - 8; Other Eukaryotes - 66 (source: NCBI BLink).
    NP_200092.2
    • DNA primases; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA primase, UL52/UL70 type, Herpesviridae (InterPro:IPR004340); Has 175 Blast hits to 154 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 0; Plants - 41; Viruses - 8; Other Eukaryotes - 46 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21395944..21399419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161303.1 → NP_001154775.1  DNA primase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154775.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YDK7, F4KHM4
      Conserved Domains (1) summary
      pfam03121
      Location:455 → 517
      Herpes_UL52; Herpesviridae UL52/UL70 DNA primase

    2. NM_124658.2 → NP_200092.2  DNA primase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200092.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KHM5, Q5XV02
      Conserved Domains (1) summary
      pfam03121
      Location:455 → 497
      Herpes_UL52; Herpesviridae UL52/UL70 DNA primase

    3. NM_001036987.1 → NP_001032064.1  DNA primase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032064.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5XV01, Q5XV02
    Nucleotide Protein
    Heading Accession and Version

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