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    CBS domain protein with a domain protein (DUF21) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835356, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CBS domain protein with a domain protein (DUF21)
    Primary source
    TAIR:AT5G52790
    Locus tag
    AT5G52790
    See related
    Araport:AT5G52790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N7.28; F6N7_28
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (21391566..21395016, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Copper transport protein family Neighboring gene transmembrane protein, putative (DUF3464) Neighboring gene DNA primase Neighboring gene ncRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in magnesium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CBS domain protein with a domain protein (DUF21)
    NP_200091.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21391566..21395016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345010.1 → NP_001332388.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UML1, A0A1P8BGS5
      Conserved Domains (1) summary
      COG1253
      Location:11 → 383
      TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

    2. NM_001345009.1 → NP_001332389.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UML1, A0A1P8BGS5
      Conserved Domains (1) summary
      COG1253
      Location:11 → 383
      TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

    3. NM_124657.3 → NP_200091.2  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200091.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KHM3, Q9LTD8
      UniProtKB/TrEMBL
      A0A178ULR3, A0A5S9YDE8, A0A654GAL7
      Conserved Domains (1) summary
      COG1253
      Location:11 → 392
      TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

    4. NM_001345011.1 → NP_001332390.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKN1, A0A1P8BGT2

    5. NM_001345012.1 → NP_001332387.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UML1, A0A1P8BGT4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTD8.2

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