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    hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835933, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hydroxyproline-rich glycoprotein family protein
    Primary source
    TAIR:AT5G58210
    Locus tag
    AT5G58210
    See related
    Araport:AT5G58210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCK7.8; MCK7_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (23552094..23554402)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Synaptobrevin family protein Neighboring gene evolutionarily conserved C-terminal region 10 Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene transthyretin-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene FRAGILE HISTIDINE TRIAD Neighboring gene YCF54 Neighboring gene oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085296.1
    NM_125206.5
    NM_203226.1
    NM_203227.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hydroxyproline-rich glycoprotein family protein
    NP_001078765.1
    • hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 3904 Blast hits to 1821 proteins in 363 species: Archae - 22; Bacteria - 592; Metazoa - 772; Fungi - 625; Plants - 211; Viruses - 44; Other Eukaryotes - 1638 (source: NCBI BLink).
    NP_200629.2
    • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 3902 Blast hits to 1819 proteins in 361 species: Archae - 22; Bacteria - 590; Metazoa - 772; Fungi - 625; Plants - 211; Viruses - 44; Other Eukaryotes - 1638 (source: NCBI BLink).
    NP_974955.1
    • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974956.1
    • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23552094..23554402
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085296.1 → NP_001078765.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078765.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK22, A0A5S9YF46, Q8GWS7
      Conserved Domains (1) summary
      pfam05109
      Location:116 → 273
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. NM_125206.5 → NP_200629.2  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200629.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK22, A0A5S9YF46, Q8GWS7
      Conserved Domains (1) summary
      pfam05109
      Location:116 → 273
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    3. NM_203227.2 → NP_974956.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974956.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK22, A0A5S9YF46, Q8GWS7
      Conserved Domains (1) summary
      pfam05109
      Location:116 → 273
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    4. NM_203226.1 → NP_974955.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974955.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK22, A0A5S9YF46, Q8GWS7
      Conserved Domains (1) summary
      pfam05109
      Location:116 → 273
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    Nucleotide Protein
    Heading Accession and Version

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