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    ATYKT62 Synaptobrevin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835930, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATYKT62
    Official Full Name
    Synaptobrevin family protein
    Primary source
    TAIR:AT5G58180
    Locus tag
    AT5G58180
    See related
    Araport:AT5G58180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCK7.5; MCK7_5; YKT62
    Summary
    member of YKT6 Gene Family
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    Genomic context

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    See ATYKT62 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (23543652..23545760)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene actin binding protein Neighboring gene SHV3-like 5 Neighboring gene evolutionarily conserved C-terminal region 10 Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene transthyretin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network. Chen Y, et al. J Mol Biol, 2005 Jul 1. PMID 15919093
    2. Functional redundancy between trans-Golgi network SNARE family members in Arabidopsis thaliana. Kim SJ, et al. BMC Biochem, 2013 Sep 11. PMID 24021022, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YKT61 and YKT62 interact with SYP41 and are essential for membrane fusion mediated by either SYP41 or SYP61 [YKT62]
      Title: YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vesicle fusion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Synaptobrevin family protein
    NP_001318826.1
    • ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G58060.1).
    NP_200626.1
    • ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G58060.1); Has 1250 Blast hits to 1250 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 351; Fungi - 294; Plants - 343; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23543652..23545760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345292.1 → NP_001318826.1  Synaptobrevin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVM9
      UniProtKB/TrEMBL
      A0A178UPU5, A0A5S9YF49
      Conserved Domains (2) summary
      COG5143
      Location:1 → 196
      SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
      cd15867
      Location:137 → 197
      R-SNARE_YKT6; SNARE motif of YKT6

    2. NM_125203.2 → NP_200626.1  Synaptobrevin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200626.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVM9
      UniProtKB/TrEMBL
      A0A178UPU5, A0A5S9YF49
      Conserved Domains (2) summary
      COG5143
      Location:1 → 196
      SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
      cd15867
      Location:137 → 197
      R-SNARE_YKT6; SNARE motif of YKT6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVM9.1

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