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    zinc ion-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836233, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc ion-binding protein
    Primary source
    TAIR:AT5G61120
    Locus tag
    AT5G61120
    See related
    Araport:AT5G61120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAF19.12; MAF19_12
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (24582225..24585818, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene zinc ion binding protein Neighboring gene plasmodesmata callose-binding protein 1 Neighboring gene U5 small nuclear ribonucleoprotein helicase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis. Qian F, et al. J Integr Plant Biol, 2021 Apr. PMID 33433058
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345443.1
    NM_125505.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone reader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in negative regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc ion-binding protein
    NP_200920.3
    • BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G61090.1); Has 125 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24582225..24585818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345444.1 → NP_001332173.1  zinc ion-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCE1, A0A1P8BG73

    2. NM_125505.4 → NP_200920.3  zinc ion-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200920.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K200, Q5PNY7, Q9FNQ3
      UniProtKB/TrEMBL
      A0A178UCE1, A0A7G2FKU7

    3. NM_001345443.1 → NP_001332172.1  zinc ion-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCE1, A0A1P8BG63
    Nucleotide Protein
    Heading Accession and Version

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