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    DIM1B Ribosomal RNA adenine dimethylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836768, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DIM1B
    Official Full Name
    Ribosomal RNA adenine dimethylase family protein
    Primary source
    TAIR:AT5G66360
    Locus tag
    AT5G66360
    See related
    Araport:AT5G66360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    adenosine dimethyl transferase 1B; K1L20.14; K1L20_14
    Summary
    Encodes a mitochondrial rRNA dimethylase.
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    Genomic context

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    See DIM1B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (26510146..26511844)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Lateral root primordium (LRP) protein-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene metal ion-binding protein Neighboring gene folate transporter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A mitochondrial rRNA dimethyladenosine methyltransferase in Arabidopsis. Richter U, et al. Plant J, 2010 Feb. PMID 19929881, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_126034.3
    NM_203274.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables rRNA (adenine-N6,N6-)-dimethyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (adenine-N6,N6-)-dimethyltransferase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within adenosine metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within rRNA modification IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal RNA adenine dimethylase family protein
    NP_201437.2
    • Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity; INVOLVED IN: rRNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT2G47420.1); Has 10133 Blast hits to 10130 proteins in 3048 species: Archae - 291; Bacteria - 6778; Metazoa - 278; Fungi - 201; Plants - 119; Viruses - 0; Other Eukaryotes - 2466 (source: NCBI BLink).
    NP_975003.1
    • Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT2G47420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26510146..26511844
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_203274.2 → NP_975003.1  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_975003.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L867, Q9FK02
      UniProtKB/TrEMBL
      A0A178UIF5, A0A5S9YJK5, A0A7G2FM48
      Conserved Domains (1) summary
      cl17173
      Location:60 → 368
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. NM_126034.3 → NP_201437.2  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201437.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FM48
      Conserved Domains (1) summary
      cl17173
      Location:60 → 340
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK02.1

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