U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    AGL89 AGAMOUS-like 89 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832818, updated on 18-Sep-2024

    Summary

    Official Symbol
    AGL89
    Official Full Name
    AGAMOUS-like 89
    Primary source
    TAIR:AT5G27580
    Locus tag
    AT5G27580
    See related
    Araport:AT5G27580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGAMOUS-like 89; F15A18.40; F15A18_40
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See AGL89 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (9736525..9737322)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DUF1995 domain protein, putative (DUF1995) Neighboring gene cell division cycle 20.2, cofactor of APC complex-like protein Neighboring gene pseudo Neighboring gene long-chain acyl-CoA synthetase 7

    Interactions

    General gene information

    NM_122640.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus  

    General protein information

    Preferred Names
    AGAMOUS-like 89
    NP_198110.1
    • AGAMOUS-like 89 (AGL89); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: female gametophyte; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G27944.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9736525..9737322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122640.2 → NP_198110.1  AGAMOUS-like 89 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198110.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0MFI6, Q7XJL1
      Conserved Domains (1) summary
      cd00266
      Location:35 → 103
      MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...
    External link. Please review our privacy policy.