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    Phosphoinositide phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832207, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Phosphoinositide phosphatase family protein
    Primary source
    TAIR:AT5G20840
    Locus tag
    AT5G20840
    See related
    Araport:AT5G20840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22D1.10; F22D1_10; SAC4; suppressor of actin 4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    16
    Sequence:
    Chromosome: 5; NC_003076.8 (7060992..7069343, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene sucrose synthase 1 Neighboring gene ncRNA Neighboring gene RAS associated with diabetes protein 51 Neighboring gene tRNA-Cys

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_122091.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Phosphoinositide phosphatase family protein
    NP_197584.2
    • Phosphoinositide phosphatase family protein; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT3G43220.1); Has 1872 Blast hits to 1673 proteins in 232 species: Archae - 0; Bacteria - 12; Metazoa - 657; Fungi - 613; Plants - 279; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7060992..7069343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122091.3 → NP_197584.2  Phosphoinositide phosphatase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197584.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7XZU1
      UniProtKB/TrEMBL
      A0A5S9Y5Y8, A0A654G300
      Conserved Domains (1) summary
      pfam02383
      Location:98 → 394
      Syja_N; SacI homology domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XZU1.1

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