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    EXLB1 expansin-like B1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827411, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EXLB1
    Official Full Name
    expansin-like B1
    Primary source
    TAIR:AT4G17030
    Locus tag
    AT4G17030
    See related
    Araport:AT4G17030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT-EXPR; ATEXLB1; ATEXPR1; ATHEXP BETA 3.1; DL4545C; expansin-like B1; EXPR; FCAALL.341
    Summary
    Encodes EXLB1 (expansin-like B1), a member of the expansin family.
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    Genomic context

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    See EXLB1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (9581562..9583290, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene transcription factor IIIB Neighboring gene transcription factor-like protein Neighboring gene CLP protease R subunit 4 Neighboring gene ureidoglycine aminohydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117807.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in sexual reproduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    expansin-like B1
    NP_193436.2
    • expansin-like B1 (EXLB1); INVOLVED IN: sexual reproduction, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin-like A2 (TAIR:AT4G38400.1); Has 1869 Blast hits to 1866 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1858; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9581562..9583290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117807.3 → NP_193436.2  expansin-like B1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193436.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23547
      UniProtKB/TrEMBL
      A0A178V0B4, A0A654FQ78, Q0WRS3
      Conserved Domains (1) summary
      PLN03023
      Location:1 → 250
      PLN03023; Expansin-like B1; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23547.2

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