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    transcription factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827410, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription factor-like protein
    Primary source
    TAIR:AT4G17020
    Locus tag
    AT4G17020
    See related
    Araport:AT4G17020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4540C; FCAALL.340
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    15
    Sequence:
    Chromosome: 4; NC_003075.7 (9577776..9581439, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene neurofilament heavy protein Neighboring gene pseudo Neighboring gene transcription factor IIIB Neighboring gene expansin-like B1 Neighboring gene CLP protease R subunit 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203816.1
    NM_202835.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIIH core complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor-like protein
    NP_001190745.1
    • transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb2 (InterPro:IPR004598).
    NP_193435.2
    • transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb2 (InterPro:IPR004598); Has 424 Blast hits to 423 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 151; Plants - 51; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
    NP_974564.1
    • transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb2 (InterPro:IPR004598); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9577776..9581439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117806.4 → NP_193435.2  transcription factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193435.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23546, Q680F9, Q680U9
      UniProtKB/TrEMBL
      A0A178V374, A0A5S9XTK1
      Conserved Domains (1) summary
      pfam03849
      Location:13 → 365
      Tfb2; Transcription factor Tfb2

    2. NM_202835.2 → NP_974564.1  transcription factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974564.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V374, A0A5S9XTK1, F4JNC9
      Conserved Domains (1) summary
      pfam03849
      Location:13 → 365
      Tfb2; Transcription factor Tfb2

    3. NM_001203816.1 → NP_001190745.1  transcription factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190745.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V374, A0A5S9XTK1, F4JND0
      Conserved Domains (1) summary
      pfam03849
      Location:13 → 365
      Tfb2; Transcription factor Tfb2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q680U9.1

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