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    ALPHA-SNAP2 alpha-soluble NSF attachment protein 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824785, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ALPHA-SNAP2
    Official Full Name
    alpha-soluble NSF attachment protein 2
    Primary source
    TAIR:AT3G56190
    Locus tag
    AT3G56190
    See related
    Araport:AT3G56190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    alpha-soluble NSF attachment protein 2; ASNAP
    Summary
    Encodes one of two alpha-SNAPs (soluble NSF attachment protein) in Arabidopsis
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    Genomic context

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    See ALPHA-SNAP2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (20845674..20848695, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Sodium Bile acid symporter family Neighboring gene Ca-2+ dependent nuclease Neighboring gene LURP-one-like protein (DUF567) Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Beet cyst nematode HsSNARE1 interacts with both AtSNAP2 and AtPR1 and promotes disease in Arabidopsis. Zhao J, et al. J Adv Res, 2023 May. PMID 35872350, Free PMC Article
    2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    3. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Beet cyst nematode HsSNARE1 interacts with both AtSNAP2 and AtPR1 and promotes disease in Arabidopsis.
      Title: Beet cyst nematode HsSNARE1 interacts with both AtSNAP2 and AtPR1 and promotes disease in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035795.1
    NM_115477.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    alpha-soluble NSF attachment protein 2
    NP_001030872.1
    • alpha-soluble NSF attachment protein 2 (ALPHA-SNAP2); FUNCTIONS IN: soluble NSF attachment protein activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: alpha-soluble NSF attachment protein 1 (TAIR:AT3G56450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_191178.1
    • alpha-soluble NSF attachment protein 2 (ALPHA-SNAP2); FUNCTIONS IN: soluble NSF attachment protein activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: alpha-soluble NSF attachment protein 1 (TAIR:AT3G56450.1); Has 1132 Blast hits to 1050 proteins in 284 species: Archae - 29; Bacteria - 93; Metazoa - 509; Fungi - 163; Plants - 164; Viruses - 11; Other Eukaryotes - 163 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20845674..20848695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115477.3 → NP_191178.1  alpha-soluble NSF attachment protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191178.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SPE6
      UniProtKB/TrEMBL
      A0A178VG00, A0A384LGX0, A0A7G2EVH3, Q29Q46
      Conserved Domains (2) summary
      sd00006
      Location:105 → 141
      TPR; TPR repeat [structural motif]
      pfam14938
      Location:20 → 278
      SNAP; Soluble NSF attachment protein, SNAP

    2. NM_001035795.1 → NP_001030872.1  alpha-soluble NSF attachment protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030872.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IZC8
      Conserved Domains (3) summary
      sd00006
      Location:56 → 92
      TPR; TPR repeat [structural motif]
      cd15832
      Location:17 → 229
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
      pfam13414
      Location:63 → 125
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SPE6.1

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