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    paired amphipathic helix repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839036, updated on 18-Sep-2024

    Summary

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    Official Full Name
    paired amphipathic helix repeat-containing protein
    Primary source
    TAIR:AT1G24220
    Locus tag
    AT1G24220
    See related
    Araport:AT1G24220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3I6.15; F3I6_15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (8578658..8582767, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene miscRNA Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene Ribosomal protein L19 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    paired amphipathic helix repeat-containing protein
    NP_001319074.1
    • paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27240.1); Has 1794 Blast hits to 623 proteins in 172 species: Archae - 0; Bacteria - 12; Metazoa - 580; Fungi - 353; Plants - 743; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8578658..8582767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332642.1 → NP_001319074.1  paired amphipathic helix repeat-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VTX1, O48689

    2. NM_102268.1 → NP_173832.1  paired amphipathic helix repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173832.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VTX1, O48689
      Conserved Domains (1) summary
      pfam02671
      Location:193 → 228
      PAH; Paired amphipathic helix repeat
    Nucleotide Protein
    Heading Accession and Version

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