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    HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816921, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
    Primary source
    TAIR:AT2G23890
    Locus tag
    AT2G23890
    See related
    Araport:AT2G23890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29E15.9; T29E15_9
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (10170576..10173945)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene Pectin lyase-like superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335869.1
    NM_127950.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
    NP_179967.3
    • HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380), Purine 5'-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT1G75210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10170576..10173945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335868.1 → NP_001324879.1  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VR03, A0A1P8B1F7, A0A384KQ93, A0A5S9X0T2

    2. NM_127950.4 → NP_179967.3  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179967.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X0T2, A0A654EVI0, Q84MD4
      Conserved Domains (1) summary
      pfam05761
      Location:107 → 543
      5_nucleotid; 5' nucleotidase family

    3. NM_001335869.1 → NP_001324878.1  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VR85, A0A178VTZ6, A0A1P8B1F9, A0A384L3V1
      Conserved Domains (1) summary
      pfam05761
      Location:17 → 453
      5_nucleotid; 5' nucleotidase family
    Nucleotide Protein
    Heading Accession and Version

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