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    auxin canalization protein (DUF828) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827127, updated on 18-Sep-2024

    Summary

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    Official Full Name
    auxin canalization protein (DUF828)
    Primary source
    TAIR:AT4G14740
    Locus tag
    AT4G14740
    See related
    Araport:AT4G14740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3410C; FCAALL.302
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (8450158..8454159, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein Neighboring gene miscRNA Neighboring gene Bax inhibitor-1 family protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of the Arabidopsis FORKED1-LIKE gene family act to localize PIN1 in developing veins. Prabhakaran Mariyamma N, et al. J Exp Bot, 2018 Sep 14. PMID 29982821, Free PMC Article
    2. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036565.3
    NM_001340963.1
    NM_117559.6
    NM_202820.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within post-Golgi vesicle-mediated transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    colocalizes_with trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin canalization protein (DUF828)
    NP_001031642.1
    • FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_193210.2
    • FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974549.1
    • FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8450158..8454159 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202820.2 → NP_974549.1  auxin canalization protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974549.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYG4, A0A5S9XU71, A0A654FPC9, Q8VY20
      Conserved Domains (2) summary
      pfam05703
      Location:18 → 317
      Auxin_canalis; Auxin canalisation
      pfam08458
      Location:363 → 468
      PH_2; Plant pleckstrin homology-like region

    2. NM_117559.6 → NP_193210.2  auxin canalization protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193210.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYG4, A0A5S9XU71, A0A654FPC9, Q8VY20
      Conserved Domains (2) summary
      pfam05703
      Location:18 → 317
      Auxin_canalis; Auxin canalisation
      pfam08458
      Location:363 → 468
      PH_2; Plant pleckstrin homology-like region

    3. NM_001340963.1 → NP_001329636.1  auxin canalization protein (DUF828) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYG4, A0A1P8B8B1

    4. NM_001036565.3 → NP_001031642.1  auxin canalization protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031642.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q683C3
      Conserved Domains (2) summary
      pfam05703
      Location:3 → 178
      Auxin_canalis; Auxin canalization
      pfam08458
      Location:224 → 330
      PH_2; Plant pleckstrin homology-like region
    Nucleotide Protein
    Heading Accession and Version

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