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    TBL2 trichome birefringence-like protein (DUF828) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842373, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL2
    Official Full Name
    trichome birefringence-like protein (DUF828)
    Primary source
    TAIR:AT1G60790
    Locus tag
    AT1G60790
    See related
    Araport:AT1G60790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8A5.30; F8A5_30; TRICHOME BIREFRINGENCE-LIKE 2
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (22380002..22382422, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase inhibitor SMR2-like protein Neighboring gene cysteine/histidine-rich C1 domain protein Neighboring gene NSP-interacting kinase 3 Neighboring gene ATP-citrate lyase A-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Acetylation of homogalacturonan and rhamnogalacturonan-I is catalyzed by a suite of trichome birefringence-like proteins. Zhong R, et al. Plant J, 2024 Feb. PMID 37934816
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104762.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables O-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trichome birefringence-like protein (DUF828)
    NP_176278.2
    • TRICHOME BIREFRINGENCE-LIKE 2 (TBL2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G06700.1); Has 1368 Blast hits to 1349 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 0; Plants - 1355; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22380002..22382422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104762.5 → NP_176278.2  trichome birefringence-like protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176278.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22716, Q56XS6, Q8VYR3
      UniProtKB/TrEMBL
      A0A178WD17, A0A654EJS9, A0AAF0XZP1
      Conserved Domains (2) summary
      pfam13839
      Location:244 → 529
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:188 → 243
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYR3.1

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