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    Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824245, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Uncharacterized protein family (UPF0497)
    Primary source
    TAIR:AT3G50810
    Locus tag
    AT3G50810
    See related
    Araport:AT3G50810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CASP-like protein 5C2; CASPL5C2
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (18888821..18890263, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene esterase/lipase/thioesterase family protein Neighboring gene uncharacterized protein Neighboring gene PLATZ transcription factor family protein Neighboring gene photosystem II subunit O-2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339483.1
    NM_114941.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Uncharacterized protein family (UPF0497)
    NP_190650.4
    • Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G37235.1); Has 207 Blast hits to 207 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18888821..18890263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339482.1 → NP_001326370.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LP25, P0CB17, Q9SVL7
      UniProtKB/TrEMBL
      A0A178V7K7, A0A654FET6
      Conserved Domains (1) summary
      pfam04535
      Location:6 → 137
      DUF588; Domain of unknown function (DUF588)

    2. NM_114941.5 → NP_190650.4  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190650.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LP25, P0CB17, Q9SVL7
      UniProtKB/TrEMBL
      A0A178V7K7, A0A654FET6
      Conserved Domains (1) summary
      pfam04535
      Location:6 → 137
      DUF588; Domain of unknown function (DUF588)

    3. NM_001339483.1 → NP_001326371.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LP25, P0CB17, Q9SVL7
      UniProtKB/TrEMBL
      A0A178V7K7, A0A654FET6
      Conserved Domains (1) summary
      pfam04535
      Location:6 → 137
      DUF588; Domain of unknown function (DUF588)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CB17.1

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