U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    C7h12orf75 similar to human chromosome 12 open reading frame 75 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100910996, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    C7h12orf75provided by RGD
    Official Full Name
    similar to human chromosome 12 open reading frame 75provided by RGD
    Primary source
    RGD:6495714
    See related
    EnsemblRapid:ENSRNOG00000060879 AllianceGenome:RGD:6495714
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    OCC-1
    Summary
    Orthologous to human C12orf75 (chromosome 12 open reading frame 75). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 51.8), Adrenal (RPKM 20.5) and 6 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See C7h12orf75 in Genome Data Viewer
    Location:
    7q13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (21902745..21945704, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (20015102..20058448, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (25737979..26180359, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120093843 Neighboring gene uncharacterized LOC120093844 Neighboring gene uncharacterized LOC102549680 Neighboring gene adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    overexpressed in colon carcinoma 1 protein homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271382.1 → NP_001258311.1  overexpressed in colon carcinoma 1 protein homolog

      See identical proteins and their annotated locations for NP_001258311.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/Swiss-Prot
      P0CD96
      UniProtKB/TrEMBL
      A0A0G2KB69, A6IFG2
      Related
      ENSRNOP00000075676.2, ENSRNOT00000083450.3
      Conserved Domains (1) summary
      pfam15506
      Location:1 → 62
      OCC1; OCC1 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      21902745..21945704 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063262853.1 → XP_063118923.1  overexpressed in colon carcinoma 1 protein homolog isoform X2

    2. XM_063262854.1 → XP_063118924.1  overexpressed in colon carcinoma 1 protein homolog isoform X3

    3. XM_008765212.4 → XP_008763434.1  overexpressed in colon carcinoma 1 protein homolog isoform X1

      UniProtKB/Swiss-Prot
      P0CD96
      Conserved Domains (1) summary
      pfam15506
      Location:1 → 62
      OCC1; OCC1 family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CD96.1 GenPept UniProtKB/Swiss-Prot:P0CD96

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools