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    ccdc93 coiled-coil domain containing 93 [ Danio rerio (zebrafish) ]

    Gene ID: 678566, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ccdc93provided by ZNC
    Official Full Name
    coiled-coil domain containing 93provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060421-8315
    See related
    Ensembl:ENSDARG00000040678 AllianceGenome:ZFIN:ZDB-GENE-060421-8315
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:136790
    Summary
    Predicted to be involved in Golgi to plasma membrane transport. Orthologous to human CCDC93 (coiled-coil domain containing 93). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc93 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (38353452..38368138, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (38543657..38558351, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene transcription factor CP2-like 1 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 Neighboring gene phospholipase C, delta 4b Neighboring gene zinc finger protein 142

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC136790

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 93

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040324.1 → NP_001035414.1  coiled-coil domain-containing protein 93

      See identical proteins and their annotated locations for NP_001035414.1

      Status: PROVISIONAL

      Source sequence(s)
      BC115269
      UniProtKB/TrEMBL
      A0A8M1N8S5, Q1RLV7
      Related
      ENSDARP00000059573.6, ENSDART00000059574.8
      Conserved Domains (1) summary
      pfam09762
      Location:52 → 220
      KOG2701; Coiled-coil domain-containing protein (DUF2037)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      38353452..38368138 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304844.4 → XP_009303119.1  coiled-coil domain-containing protein 93 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B5S9
      Conserved Domains (1) summary
      pfam09762
      Location:52 → 220
      KOG2701; Coiled-coil domain-containing protein (DUF2037)
    Nucleotide Protein Strain
    Heading Accession and Version

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