ppp4r1 protein phosphatase 4, regulatory subunit 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ppp4r1provided by ZNC
Official Full Name: protein phosphatase 4, regulatory subunit 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-753
See related: AllianceGenome:ZFIN:ZDB-GENE-040426-753
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:55603
Summary: Predicted to enable protein phosphatase regulator activity. Predicted to be active in cytoplasm. Orthologous to human PPP4R1 (protein phosphatase 4 regulatory subunit 1). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 24

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	24	NC_007135.7 (42054151..42073135, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	24	NC_007135.6 (42101753..42132575, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003336157.1 (7031..12557, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003337155.1 (1162..3883, complement)

Chromosome 24 - NC_007135.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein phosphatase regulator activity	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: serine/threonine-protein phosphatase 4 regulatory subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200260.1 → NP_956554.1 serine/threonine-protein phosphatase 4 regulatory subunit 1

See identical proteins and their annotated locations for NP_956554.1

Status: PROVISIONAL

Source sequence(s)

BC048878

UniProtKB/TrEMBL

Q7ZUL5

Conserved Domains (3) summary

pfam15017
Location:441 → 506

AF1Q; Drug resistance and apoptosis regulator

pfam14153
Location:356 → 430

Spore_coat_CotO; Spore coat protein CotO

sd00044
Location:115 → 140

HEAT; HEAT repeat [structural motif]