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    fbxl3b F-box and leucine-rich repeat protein 3b [ Danio rerio (zebrafish) ]

    Gene ID: 450055, updated on 9-Dec-2024

    Summary

    Official Symbol
    fbxl3bprovided by ZNC
    Official Full Name
    F-box and leucine-rich repeat protein 3bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041010-178
    See related
    AllianceGenome:ZFIN:ZDB-GENE-041010-178
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fd52d09; zgc:101682
    Summary
    Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and entrainment of circadian clock by photoperiod. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human FBXL3 (F-box and leucine rich repeat protein 3). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
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    Genomic context

    See fbxl3b in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (59935102..59968146, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (60003117..60012325, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene angio-associated, migratory cell protein Neighboring gene G-protein coupled bile acid receptor 1 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene zgc:65895 Neighboring gene coiled-coil domain containing 122 Neighboring gene mitochondrial translational release factor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC450055

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006075.1NP_001006075.1  uncharacterized protein LOC450055

      See identical proteins and their annotated locations for NP_001006075.1

      Status: PREDICTED

      Source sequence(s)
      BC083245
      UniProtKB/TrEMBL
      Q5XJQ3
      Conserved Domains (1) summary
      pfam12937
      Location:3980
      F-box-like; F-box-like

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      59935102..59968146 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)